genewise output
Score 971.59 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000662_2.0    6 KTLNFNVGVLGHVDSGKTSLARALSSTASTAAFDKNPQSKERGITLDLG 
                     KTLNFNVGVLGHVDSGKTSLARALSSTASTAAFDKNPQS+ERGITLDLG 
                     KTLNFNVGVLGHVDSGKTSLARALSSTASTAAFDKNPQSRERGITLDLG 
OMLM01010753.1:13413 aacatagggcgcggagaatcgagcaaagtaggtgaacctcgagaacgcg 
                     actatatgttgataggacctcgctggcccccctaaacacgaggtctatg 
                     agttcctggtatcccggggccgggcctcggtcccgcggccgaccggcgc 


SPP00000662_2.0   55 FSAFTVPLPEHLRESCGEKQYDSLQFTLVDCPGHASLIRTIIG       
                     FS+FTV LP HLR S  ++QYDSLQFTLVDCPGHASLIRTIIG       
                     FSSFTVDLPNHLRGSGEQQQYDSLQFTLVDCPGHASLIRTIIG       
OMLM01010753.1:13560 ttttaggccacccgaggccctgacctacggtcgcgtcacaaag       
                     tcctctatcaatggggaaaaaagtatcttagcgaccttgcttg       
                     cctcggttttcggccgggggtccggccgactggcctgtgtctg       


SPP00000662_2.0   98                           AQIIDLMMLVVDVVKGMQTQTAE 
                                               AQIIDLMMLVVDVVKG+QTQTAE 
                               G:G[ggt]        AQIIDLMMLVVDVVKGVQTQTAE 
OMLM01010753.1:13689 GGTGAGCT  Intron 1   TAGGTgcaagcaacgggggaggcacagg 
                      <1-----[13690:15279]-1>  cattattttttattagtacacca 
                                               cacttaggggatggaaggtgtag 


SPP00000662_2.0  122 CLLIGQLTCSRMVVILNKTDLLPSDKRQVAIDKMTKRMHKTLENT     
                     CLLIG+LTC RMVV+LNK DLLP +KRQ AI+KMTKR+HKTLE+T     
                     CLLIGELTCQRMVVVLNKIDLLPPNKRQSAIEKMTKRLHKTLEST     
OMLM01010753.1:15351 tccaggcatccagggcaaagccccaaacagagaaaaaccaacgaa     
                     gtttgatcgagtttttaatattccaagagctaatcagtaactagc     
                     tagaaggccacggtcgcgtcggatcgagtctgggagagcaaggca     


SPP00000662_2.0  167                           FKDCPIIAVAAKPGGPEAPDTDE 
                                               FK+CP+IAVAAKPGGPEAPDT+E 
                                R:R[aga]       FKECPVIAVAAKPGGPEAPDTEE 
OMLM01010753.1:15486 AGGTCTGTA  Intron 2   CAGAtagtcgaggggacggcggcgagg 
                       <2-----[15488:15746]-2> taagcttctccacggcaccacaa 
                                               tgatagttgaggcatagttcagg 


SPP00000662_2.0  191 PQGITELID                       LLKAQSFLPHRDPSGSL 
                     PQG+ ELI+                       LLK Q++LP RDP G L 
                     PQGVPELIE                       LLKKQTYLPQRDPGGDL 
OMLM01010753.1:15817 ccggcgtagGTAAAGT  Intron 3   CAGctaacatcccagcgggc 
                     cagtcatta<0-----[15844:16649]-0>ttaaacatcagacggat 
                     agagagaag                       tggaaccctgactatct 


SPP00000662_2.0  217 LMAVDHCFSIRGQGTVITGTILQGSLSVNDNVEIPALK            
                     LMAVDHCFSIRGQGTV+TGTILQGSL+VND VEIPALK            
                     LMAVDHCFSIRGQGTVMTGTILQGSLAVNDTVEIPALK            
OMLM01010753.1:16701 cagggctttacgcgagaagaaccgtcggagaggacgca            
                     ttctaagtctggagcttcgcttagctctaactatccta            
                     ggtgttcccttagaacgtgccgggagcctctgacatag            


SPP00000662_2.0  255                        VTRKVKSVQMFRKPVASAMQGDRVGV 
                                            +T+K+KSVQMFRKPV  AMQGDRVGV 
                                            LTKKIKSVQMFRKPVLGAMQGDRVGV 
OMLM01010753.1:16815 GTATGTT  Intron 4   CAGcaaaaatgcatcacgtggacggcggg 
                     <0-----[16815:17925]-0>tcaatactattgacttgctagagtgt 
                                            gcggagggggtggagggcgggtcgcg 


SPP00000662_2.0  281 CVTQFDPKLLERGVVCTPGSLQTLYAAIISVQKIEYYRGALNSRAKFHI 
                     CVTQFDPKLLERGVVCTPGSL+TLYAA+ISV+KI Y++G+L +RAKFHI 
                     CVTQFDPKLLERGVVCTPGSLRTLYAAVISVRKISYFKGSLATRAKFHI 
OMLM01010753.1:18004 tgactgcactgcgggtacgtccactgggatgaaatttagtcgacgatca 
                     gtcatacattaggttgccgctgctaccttctgatcatagctccgcatat 
                     tgggtctagagagggccagcaccctaacctcggacccgcttcctcgtca 


SPP00000662_2.0  330 TVGHETVMARISFFNRVLPANEN---GDSKPTSQEQSA--NSFSFDWEF 
                     TVGHETVMAR +FF    PA  +    D+KP + +  +    F+FD E+ 
                     TVGHETVMARSTFFG-LSPAGSSEFLSDTKPPASQPCSLEKPFTFDREY 
OMLM01010753.1:18151 aggcgagagatattg ctcggttgtctgaaccgtcctttgactatgagt 
                     ctgaacttcgccttg tcccgccattcacaccccacgctaactctagaa 
                     tggtgacggggcctc tatgtcagtctctaattagtccgaacccccggc 


SPP00000662_2.0  374 HHLDEHLTSQAEGGKG-EPQQWALLEFERPVTCPPLCLVIGSRLDSDIH 
                      + DE++T Q E   G  P+QWALLEFERPVTCP LCLVIGS+LD+DIH 
                     FYQDEYVTGQREATSGADPEQWALLEFERPVTCPSLCLVIGSKLDTDIH 
OMLM01010753.1:18295 ttcggtgagcaggatgggcgctgtcgtgccgatctctcgagtacgagac 
                     taaaaatcgagacccgcacaagcttatagctcgcctgtttgcatacata 
                     ccgtattttgaggtagtcagagcgggtagacatcacctgtccggcacct 


SPP00000662_2.0  422 GNTCRLAFHGKLLEGFEDKNYTETALPRLKISKDKQKEGAVER       
                      N CRLAF G LL GFEDKNY+ETALPRL I K KQ+EG VER       
                     ANACRLAFQGCLLHGFEDKNYSETALPRLYICKTKQREGQVER       
OMLM01010753.1:18442 gagtctgtcgtctcgtggaatagagcccctataaacaggcgga       
                     cacggtctaggttagtaaaaagacctcgtatgacaagagatag       
                     ctatgaccactgatatatacccgtcgttgcccgcaaggagggg       


SPP00000662_2.0  465                        VTDDYTVIGRNLFKKETNLQLFVGLK 
                                            VTDDYTVIGRNLFKKETNLQLFVGL+ 
                                            VTDDYTVIGRNLFKKETNLQLFVGLE 
OMLM01010753.1:18571 GTGAGTG  Intron 5   CAGgaggtagagcactaagaaccctggtg 
                     <0-----[18571:20043]-0>tcaaacttggattaaacatatttgta 
                                            gtttctttcccgcgagcccgatgggg 


SPP00000662_2.0  491 VTLSTGEAGSIEGGFGQSGKIKIRIP                        
                     VTLSTGE G IEGGFGQSGK+KIR+P                        
                     VTLSTGERGVIEGGFGQSGKFKIRVP          E:E[gag]      
OMLM01010753.1:20122 gattaggaggagggtgcagataacgcGGTAAGGA  Intron 6      
                     tctccgaggttaggtgaggatatgtc <1-----[20201:22524]   
                     cagaacgacctgtgtagcgatgttga                        


SPP00000662_2.0  517      GLKEETKQLLSSSSKKKGKGGSKNESPKLEEAKPDAQPVTIHLN 
                          GL+ ETK++L+SSSKKKGKGGSK      EE K D+QPV+IHL+ 
                          GLRPETKEILNSSSKKKGKGGSKGGPANEEEPKVDSQPVSIHLH 
OMLM01010753.1:22522 CAGAGgcccgaagatatataaagaggaaggcgagggcaggtccgaactc 
                     -1>  gtgcacaattacgcaaagagggaggccaaaacatacactgtata 
                          tttaacagaaccctggaggggcatctataggtaattgatctcgt 


SPP00000662_2.0  562 FKRYIYDPHKKMVQS                                   
                     FKRY++DPHKKMVQS                                   
                     FKRYVFDPHKKMVQS                                   
OMLM01010753.1:22659 tactgtgccaaagct                                   
                     tagattacaaattac                                   
                     cattcctctaggtgt                                   


//
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a E in phase 1 intron
>OMLM01010753.1:subseq(0,54496).pep
KTLNFNVGVLGHVDSGKTSLARALSSTASTAAFDKNPQSRERGITLDLGFSSFTVDLPNH
LRGSGEQQQYDSLQFTLVDCPGHASLIRTIIGGAQIIDLMMLVVDVVKGVQTQTAECLLI
GELTCQRMVVVLNKIDLLPPNKRQSAIEKMTKRLHKTLESTRFKECPVIAVAAKPGGPEA
PDTEEPQGVPELIELLKKQTYLPQRDPGGDLLMAVDHCFSIRGQGTVMTGTILQGSLAVN
DTVEIPALKLTKKIKSVQMFRKPVLGAMQGDRVGVCVTQFDPKLLERGVVCTPGSLRTLY
AAVISVRKISYFKGSLATRAKFHITVGHETVMARSTFFGLSPAGSSEFLSDTKPPASQPC
SLEKPFTFDREYFYQDEYVTGQREATSGADPEQWALLEFERPVTCPSLCLVIGSKLDTDI
HANACRLAFQGCLLHGFEDKNYSETALPRLYICKTKQREGQVERVTDDYTVIGRNLFKKE
TNLQLFVGLEVTLSTGERGVIEGGFGQSGKFKIRVPEGLRPETKEILNSSSKKKGKGGSK
GGPANEEEPKVDSQPVSIHLHFKRYVFDPHKKMVQS
//
>OMLM01010753.1:subseq(0,54496).[13413:22703].sp
AAAACGCTTAATTTCAACGTTGGGGTGCTTGGACATGTCGACAGCGGGAAGACGTCGCTC
GCCAGGGCGCTGAGCAGCACTGCCTCGACGGCTGCCTTCGACAAGAACCCGCAGTCCCGC
GAGAGAGGCATCACGCTGGACCTGGGCTTCTCCTCTTTCACGGTGGATCTTCCTAATCAC
CTGCGGGGCAGCGGGGAGCAGCAGCAGTATGACAGCCTGCAGTTCACCCTGGTAGACTGT
CCGGGGCACGCCTCTCTGATTCGGACTATCATTGGGGGTGCCCAAATCATTGATCTAATG
ATGCTGGTGGTAGATGTGGTGAAAGGAGTGCAGACTCAGACTGCAGAGTGTCTACTGATA
GGAGAGCTGACCTGCCAACGCATGGTGGTTGTCCTGAACAAGATTGACCTGCTGCCACCT
AACAAGAGACAGAGTGCCATTGAGAAGATGACAAAGAGACTGCACAAAACACTGGAGAGC
ACAAGATTTAAGGAATGTCCAGTGATTGCTGTGGCAGCGAAGCCCGGAGGTCCAGAGGCT
CCTGACACAGAGGAGCCACAGGGAGTGCCAGAGTTAATAGAGCTTTTGAAGAAACAAACC
TACCTCCCTCAGAGAGACCCTGGAGGTGACCTTCTGATGGCTGTGGATCATTGCTTCTCC
ATTCGTGGACAGGGAACAGTCATGACTGGGACCATCCTGCAGGGGTCACTGGCCGTCAAT
GACACTGTGGAAATCCCAGCTCTAAAGCTGACCAAGAAGATAAAGTCGGTGCAGATGTTT
CGGAAGCCAGTGTTGGGGGCCATGCAGGGGGATCGCGTGGGCGTGTGTGTGACGCAGTTT
GACCCTAAACTGTTAGAGCGAGGGGTGGTGTGCACCCCAGGGTCCCTACGCACCCTCTAT
GCAGCAGTCATCTCTGTCAGGAAGATATCCTACTTCAAGGGCTCTCTTGCCACCCGTGCC
AAGTTTCACATAACTGTGGGGCATGAGACAGTCATGGCGAGGTCGACCTTCTTTGGCCTT
TCACCTGCGGGTTCCTCAGAGTTTCTCTCTGACACTAAACCACCTGCTTCACAGCCTTGC
TCCTTGGAAAAACCCTTCACCTTCGACAGGGAGTACTTCTACCAGGATGAATATGTTACT
GGTCAGAGAGAGGCGACTTCAGGGGCTGACCCAGAGCAATGGGCCTTGCTGGAGTTTGAA
CGGCCAGTCACATGTCCCTCACTCTGCCTTGTGATTGGCTCCAAGCTGGACACAGACATC
CATGCCAATGCATGTCGGTTAGCCTTCCAAGGCTGTCTGTTACATGGATTTGAAGATAAA
AACTACAGCGAGACTGCCCTGCCTCGTCTGTACATCTGCAAGACCAAACAAAGGGAGGGA
CAGGTGGAGAGGGTGACTGATGATTACACTGTTATTGGCCGCAACCTGTTCAAGAAAGAG
ACCAACCTCCAGCTATTTGTGGGGTTGGAGGTCACATTGTCAACAGGCGAGAGAGGCGTC
ATTGAGGGTGGGTTTGGACAGAGCGGGAAATTTAAGATTCGTGTGCCAGAGGGTCTTCGT
CCAGAAACCAAAGAGATATTAAACTCCAGCTCTAAGAAGAAAGGGAAGGGGGGGAGCAAA
GGTGGCCCTGCAAATGAAGAGGAGCCTAAAGTAGATTCTCAGCCAGTTAGCATTCACTTG
CATTTCAAACGTTATGTCTTCGATCCCCATAAAAAGATGGTTCAGTCT
//
OMLM01010753.1:subseq(0,54496)	GeneWise	match	13413	22703	974.58	+	.	OMLM01010753.1:subseq(0,54496)-genewise-prediction-1
OMLM01010753.1:subseq(0,54496)	GeneWise	cds	13413	13689	0.00	+	0	OMLM01010753.1:subseq(0,54496)-genewise-prediction-1
OMLM01010753.1:subseq(0,54496)	GeneWise	intron	13690	15279	0.00	+	.	OMLM01010753.1:subseq(0,54496)-genewise-prediction-1
OMLM01010753.1:subseq(0,54496)	GeneWise	cds	15280	15487	0.00	+	2	OMLM01010753.1:subseq(0,54496)-genewise-prediction-1
OMLM01010753.1:subseq(0,54496)	GeneWise	intron	15488	15746	0.00	+	.	OMLM01010753.1:subseq(0,54496)-genewise-prediction-1
OMLM01010753.1:subseq(0,54496)	GeneWise	cds	15747	15843	0.00	+	1	OMLM01010753.1:subseq(0,54496)-genewise-prediction-1
OMLM01010753.1:subseq(0,54496)	GeneWise	intron	15844	16649	0.00	+	.	OMLM01010753.1:subseq(0,54496)-genewise-prediction-1
OMLM01010753.1:subseq(0,54496)	GeneWise	cds	16650	16814	0.00	+	0	OMLM01010753.1:subseq(0,54496)-genewise-prediction-1
OMLM01010753.1:subseq(0,54496)	GeneWise	intron	16815	17925	0.00	+	.	OMLM01010753.1:subseq(0,54496)-genewise-prediction-1
OMLM01010753.1:subseq(0,54496)	GeneWise	cds	17926	18570	0.00	+	0	OMLM01010753.1:subseq(0,54496)-genewise-prediction-1
OMLM01010753.1:subseq(0,54496)	GeneWise	intron	18571	20043	0.00	+	.	OMLM01010753.1:subseq(0,54496)-genewise-prediction-1
OMLM01010753.1:subseq(0,54496)	GeneWise	cds	20044	20200	0.00	+	0	OMLM01010753.1:subseq(0,54496)-genewise-prediction-1
OMLM01010753.1:subseq(0,54496)	GeneWise	intron	20201	22524	0.00	+	.	OMLM01010753.1:subseq(0,54496)-genewise-prediction-1
OMLM01010753.1:subseq(0,54496)	GeneWise	cds	22525	22703	0.00	+	2	OMLM01010753.1:subseq(0,54496)-genewise-prediction-1
//